Which is safer in terms of security?
Native apps use gnome keyring which is not encrypted.
Are browser logins better or they are vulnerable to cookie stealing?
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Doing things in the browser will be a lot more secure than doing things in native Linux applications.
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What about sesion/cookie hijacking? Isn’t that more risky? If for example i stay logged in in my password manager on the browser rather than having a linux app?
Please at least provide us with some background on what you are trying to protect and from whom.
This is for all os. That browser will be a better option
Browser-based encryption defeats the purpose of E2EE and puts more trust in the provider than is needed. For this specifically, a native program is better.